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» Geometric Alignment of 2D Gel Electrophoresis Images
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JCB
2006
107views more  JCB 2006»
13 years 5 months ago
Protein Image Alignment via Piecewise Affine Transformations
Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...
Florian A. Potra, Xing Liu, Françoise Seill...
PRL
2011
12 years 8 months ago
Structural matching of 2D electrophoresis gels using deformed graphs
2D electrophoresis is a well known method for protein separation which is extremely useful in the field of proteomics. Each spot in the image represents a protein accumulation an...
Alexandre Noma, Alvaro Pardo, Roberto Marcondes Ce...
COMPGEOM
1998
ACM
13 years 9 months ago
Matching 2D Patterns of Protein Spots
A new algorithmic approach to comparing 2D patterns of protein spots obtained by the 2D gel electrophoresis technique is presented. Both the matching of a local pattern vs. a full...
Frank Hoffmann, Klaus Kriegel, Carola Wenk
BMCBI
2006
125views more  BMCBI 2006»
13 years 5 months ago
Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow
Background: In the post-genome era, most research scientists working in the field of proteomics are confronted with difficulties in management of large volumes of data, which they...
Hiraku Morisawa, Mikako Hirota, Tosifusa Toda