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» Good Spaced Seeds For Homology Search
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AAAI
2004
13 years 6 months ago
Leap Before You Look: An Effective Strategy in an Oversubscribed Scheduling Problem
Oversubscribed scheduling problems require removing or partially satisfying tasks when enough resources are not available. For a particular oversubscribed problem, Air Force Satel...
Laura Barbulescu, L. Darrell Whitley, Adele E. How...
ICPP
2003
IEEE
13 years 10 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
GECCO
2010
Springer
254views Optimization» more  GECCO 2010»
13 years 10 months ago
Evolving viral marketing strategies
One method of viral marketing involves seeding certain consumers within a population to encourage faster adoption of the product throughout the entire population. However, determi...
Forrest Stonedahl, William Rand, Uri Wilensky
CCECE
2006
IEEE
13 years 11 months ago
Evaluation of RNA Secondary Structure Motifs using Regression Analysis
Recent experimental evidences have shown that ribonucleic acid (RNA) plays a greater role in the cell than previously thought. An ensemble of RNA sequences believed to contain sig...
Mohammad Anwar, Marcel Turcotte
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
14 years 5 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...