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ESCIENCE
2006
IEEE
13 years 9 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...
HPCS
2005
IEEE
13 years 9 months ago
A Lightweight, Scalable Grid Computing Framework for Parallel Bioinformatics Applications
Abstract— In recent years our society has witnessed an unprecedented growth in computing power available to tackle important problems in science, engineering and medicine. For ex...
Hans De Sterck, Rob S. Markel, Rob Knight
CCGRID
2006
IEEE
13 years 7 months ago
Building Cyberinfrastructure for Bioinformatics Using Service Oriented Architecture
-- Cyberinfrastructure makes the development and deployment of bioinformatics applications easier by providing the framework and components that may be loosely coupled using servic...
Wilfred W. Li, Sriram Krishnan, Kurt Mueller, Kohe...
BMCBI
2010
175views more  BMCBI 2010»
13 years 3 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
COREGRID
2007
Springer
13 years 9 months ago
Simplifying Grid Application Programming Using Web-Enabled Code Transfer Tools
This paper deals with one of the fundamental properties of grid computing – transferring code between grid nodes and executing it remotely on heterogeneous hosts. Contemporary mi...
Catalin Dumitrescu, Jan Dünnweber, Philipp L&...