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HEURISTICS
2002
81views more  HEURISTICS 2002»
13 years 4 months ago
Heuristics for the Phylogeny Problem
In view of the strong increasing number of phylogeny problems and instances, the assessment of the respective optimization algorithms has become harder too. This paper contributes ...
Alexandre A. Andreatta, Celso C. Ribeiro
BMCBI
2010
185views more  BMCBI 2010»
12 years 11 months ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
CPM
2000
Springer
141views Combinatorics» more  CPM 2000»
13 years 8 months ago
A Lower Bound for the Breakpoint Phylogeny Problem
Breakpoint phylogenies methods have been shown to be an effective way to extract phylogenetic information from gene order data. Currently, the only practical breakpoint phylogeny a...
David Bryant
TCBB
2008
122views more  TCBB 2008»
13 years 4 months ago
Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference
Reconstruction of phylogenetic trees is a fundamental problem in computational biology. While excellent heuristic methods are available for many variants of this problem, new adva...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
ICPADS
2005
IEEE
13 years 10 months ago
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction
: Accurate reconstruction of phylogenetic trees very often involves solving hard optimization problems, particularly the maximum parsimony (MP) and maximum likelihood (ML) problems...
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Cru...