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» Hidden conformations in protein structures
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NAR
2010
106views more  NAR 2010»
12 years 11 months ago
Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry
The backbone bond lengths, bond angles, and planarity of a protein are influenced by the backbone conformation (u,w), but no tool exists to explore these relationships, leaving th...
Donald S. Berkholz, Peter B. Krenesky, John R. Dav...
BMCBI
2010
109views more  BMCBI 2010»
13 years 5 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
BIB
2007
82views more  BIB 2007»
13 years 5 months ago
High-throughput modeling and analysis of protein structural dynamics
Protein function is a dynamic property closely related to the conformational mechanisms of protein structure in its physiological environment. To understand and control the functi...
Xiong Liu, Hassan A. Karimi
NAR
2011
164views Computer Vision» more  NAR 2011»
12 years 7 months ago
PCDB: a database of protein conformational diversity
PCDB (http://www.pcdb.unq.edu.ar) is a database of protein conformational diversity. For each protein, the database contains the redundant compilation of all the corresponding cry...
Ezequiel I. Juritz, Sebastian Fernandez Alberti, G...
AE
2005
Springer
13 years 10 months ago
Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
An encoding scheme for protein folding on lattice models, inspired by parametric L-systems, was proposed. The encoding incorporates problem domain knowledge in the form of predesig...
Gabriela Ochoa, Gabi Escuela, Natalio Krasnogor