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VIS
2007
IEEE
138views Visualization» more  VIS 2007»
14 years 6 months ago
Two Level Approach to Efficient Visualization of Protein Dynamics
Proteins are highly flexible and large amplitude deformations of their structure, also called slow dynamics, are often decisive to their function. We present a two-level rendering ...
Ove Daae Lampe, Ivan Viola, Nathalie Reuter, He...
BMCBI
2010
132views more  BMCBI 2010»
13 years 5 months ago
New statistical potential for quality assessment of protein models and a survey of energy functions
Background: Scoring functions, such as molecular mechanic forcefields and statistical potentials are fundamentally important tools in protein structure modeling and quality assess...
Dmitry Rykunov, András Fiser
SCFBM
2008
92views more  SCFBM 2008»
13 years 4 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
TFS
2008
174views more  TFS 2008»
13 years 5 months ago
Type-2 Fuzzy Markov Random Fields and Their Application to Handwritten Chinese Character Recognition
In this paper, we integrate type-2 (T2) fuzzy sets with Markov random fields (MRFs) referred to as T2 FMRFs, which may handle both fuzziness and randomness in the structural patter...
Jia Zeng, Zhi-Qiang Liu
BMCBI
2006
108views more  BMCBI 2006»
13 years 5 months ago
Gene function classification using Bayesian models with hierarchy-based priors
We investigate the application of hierarchical classification schemes to the annotation of gene function based on several characteristics of protein sequences including phylogenic ...
Babak Shahbaba, Radford M. Neal