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» High quality visualization of biochemical pathways in BioPat...
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ISB
2002
112views more  ISB 2002»
13 years 3 months ago
High quality visualization of biochemical pathways in BioPath
ABSTRACT: Biochemical reactions form large and complex networks. Comprehensible visual representations of these networks help biochemists understand the relationships between the c...
Falk Schreiber
BMCBI
2010
191views more  BMCBI 2010»
13 years 3 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
BMCBI
2008
121views more  BMCBI 2008»
13 years 3 months ago
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments
Background: High-throughput methods that allow for measuring the expression of thousands of genes or proteins simultaneously have opened new avenues for studying biochemical proce...
Andreas Keller, Christina Backes, Maher Al-Awadhi,...
BMCBI
2007
107views more  BMCBI 2007»
13 years 3 months ago
Linking microarray reporters with protein functions
Background: The analysis of microarray experiments requires accurate and up-to-date functional annotation of the microarray reporters to optimize the interpretation of the biologi...
Stan Gaj, Arie van Erk, Rachel I. M. van Haaften, ...
BMCBI
2004
95views more  BMCBI 2004»
13 years 3 months ago
PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of or
Background: The rapidly increasing number of completely sequenced genomes led to the establishment of the COG-database which, based on sequence homologies, assigns similar protein...
Florian Meereis, Michael Kaufmann