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» ISHAPE: new rapid and accurate software for haplotyping
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BMCBI
2007
131views more  BMCBI 2007»
13 years 5 months ago
ISHAPE: new rapid and accurate software for haplotyping
Background: We have developed a new haplotyping program based on the combination of an iterative multiallelic EM algorithm (IEM), bootstrap resampling and a pseudo Gibbs sampler. ...
Olivier Delaneau, Cédric Coulonges, Pierre-...
BMCBI
2008
120views more  BMCBI 2008»
13 years 5 months ago
Shape-IT: new rapid and accurate algorithm for haplotype inference
Background: We have developed a new computational algorithm, Shape-IT, to infer haplotypes under the genetic model of coalescence with recombination developed by Stephens et al in...
Olivier Delaneau, Cédric Coulonges, Jean-Fr...
BMCBI
2004
112views more  BMCBI 2004»
13 years 5 months ago
A double classification tree search algorithm for index SNP selection
Background: In population-based studies, it is generally recognized that single nucleotide polymorphism (SNP) markers are not independent. Rather, they are carried by haplotypes, ...
Peisen Zhang, Huitao Sheng, Ryuhei Uehara
CODES
1999
IEEE
13 years 9 months ago
Optimized rapid prototyping for real-time embedded heterogeneous multiprocessors
This paper presents an enhancement of our "Algorithm Architecture Adequation" (AAA) prototyping methodology which allows to rapidly develop and optimize the implementati...
Thierry Grandpierre, Christophe Lavarenne, Yves So...
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 5 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...