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ALGORITHMICA
2008
71views more  ALGORITHMICA 2008»
13 years 4 months ago
Improved Approximate String Matching Using Compressed Suffix Data Structures
Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong
CPM
2006
Springer
175views Combinatorics» more  CPM 2006»
13 years 8 months ago
On-Line Linear-Time Construction of Word Suffix Trees
Abstract. Suffix trees are the key data structure for text string matching, and are used in wide application areas such as bioinformatics and data compression. Sparse suffix trees ...
Shunsuke Inenaga, Masayuki Takeda
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 4 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
FOCS
2009
IEEE
13 years 8 months ago
Space-Efficient Framework for Top-k String Retrieval Problems
Given a set D = {d1, d2, ..., dD} of D strings of total length n, our task is to report the "most relevant" strings for a given query pattern P. This involves somewhat mo...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter
IJFCS
2006
108views more  IJFCS 2006»
13 years 4 months ago
Reconstructing a Suffix Array
Abstract. For certain problems (for example, computing repetitions and repeats, data compression applications) it is not necessary that the suffixes of a string represented in a su...
Frantisek Franek, William F. Smyth