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» Improved Layout of Phylogenetic Networks
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TCBB
2008
101views more  TCBB 2008»
13 years 4 months ago
Improved Layout of Phylogenetic Networks
Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal-angle algorithm is used to draw such networks, producing layouts that leave much room f...
Philippe Gambette, Daniel H. Huson
BMCBI
2008
111views more  BMCBI 2008»
13 years 4 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMEI
2008
IEEE
13 years 10 months ago
Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks
Inferring transcriptional regulatory networks from geneexpression data remains a challenging problem, in part because of the noisy nature of the data and the lack of strong networ...
Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret
BMCBI
2007
131views more  BMCBI 2007»
13 years 4 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini