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    » Improving Operon Prediction in E. coli
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 8 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
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    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    BMCBI
    2008
    86views more  BMCBI 2008»
    Predicting protein linkages in bacteria: Which method is best depends on task
    13 years 5 months ago
    Predicting protein linkages in bacteria: Which method is best depends on task
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    Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
    Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...
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    BMCBI
    2008
    118views more  BMCBI 2008»
    Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
    13 years 5 months ago
    Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
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    Background: The detection of conserved motifs in promoters of orthologous genes (phylogenetic footprints) has become a common strategy to predict cis-acting regulatory elements. S...
    Rekin's Janky, Jacques van Helden
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    NAR
    2011
    267views Computer Vision» more  NAR 2011»
    EcoCyc: a comprehensive database of Escherichia coli biology
    12 years 11 months ago
    EcoCyc: a comprehensive database of Escherichia coli biology
    Download  www.ai.sri.com
    EcoCyc (http://EcoCyc.org) is a comprehensive model organism database for Escherichia coli K-12 MG1655. From the scientific literature, EcoCyc captures the functions of individual...
    Ingrid M. Keseler, Julio Collado-Vides, Alberto Sa...
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    BMCBI
    2010
    104views more  BMCBI 2010»
    Bidirectional best hit r-window gene clusters
    13 years 5 months ago
    Bidirectional best hit r-window gene clusters
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    Background: Conserved gene clusters are groups of genes that are located close to one another in the genomes of several species. They tend to code for proteins that have a functio...
    Melvin Zhang, Hon Wai Leong
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