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EDBT
2009
ACM
138views Database» more  EDBT 2009»
14 years 23 days ago
FOGGER: an algorithm for graph generator discovery
To our best knowledge, all existing graph pattern mining algorithms can only mine either closed, maximal or the complete set of frequent subgraphs instead of graph generators whic...
Zhiping Zeng, Jianyong Wang, Jun Zhang, Lizhu Zhou
BMCBI
2008
118views more  BMCBI 2008»
13 years 6 months ago
MetWAMer: eukaryotic translation initiation site prediction
Background: Translation initiation site (TIS) identification is an important aspect of the gene annotation process, requisite for the accurate delineation of protein sequences fro...
Michael E. Sparks, Volker Brendel
BMCBI
2008
101views more  BMCBI 2008»
13 years 6 months ago
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related
Background: For many types of analyses, data about gene structure and locations of non-coding regions of genes are required. Although a vast amount of genomic sequence data is ava...
Oliver Keller, Florian Odronitz, Mario Stanke, Mar...
BMCBI
2011
13 years 14 days ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...