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STRINGOLOGY
2004
13 years 6 months ago
Sorting suffixes of two-pattern strings
Recently, several authors presented linear recursive algorithms for sorting suffixes of a string. All these algorithms employ a similar three-step approach, based on an initial di...
Frantisek Franek, William F. Smyth
ALGORITHMICA
1999
112views more  ALGORITHMICA 1999»
13 years 4 months ago
Suffix Trees on Words
We discuss an intrinsic generalization of the suffix tree, designed to index a string of length n which has a natural partitioning into m multicharacter substrings or words. This ...
Arne Andersson, N. Jesper Larsson, Kurt Swanson
DCC
2009
IEEE
14 years 5 months ago
Linear Suffix Array Construction by Almost Pure Induced-Sorting
We present a linear time and space suffix array (SA) construction algorithm called the SA-IS algorithm. The SA-IS algorithm is novel because of the LMS-substrings used for the pro...
Ge Nong, Sen Zhang, Wai Hong Chan
CPM
2009
Springer
131views Combinatorics» more  CPM 2009»
13 years 8 months ago
Linear Time Suffix Array Construction Using D-Critical Substrings
In this paper we present in detail a new efficient linear time and space suffix array construction algorithm(SACA), called the D-CriticalSubstring algorithm. The algorithm is built...
Ge Nong, Sen Zhang, Wai Hong Chan
CIKM
2008
Springer
13 years 7 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...