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BMCBI
2004
98views more  BMCBI 2004»
13 years 4 months ago
Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE)
Background: Serial Analysis of Gene Expression (SAGE) is a functional genomic technique that quantitatively analyzes the cellular transcriptome. The analysis of SAGE libraries rel...
Sergey V. Anisimov, Alexei A. Sharov
BMCBI
2006
97views more  BMCBI 2006»
13 years 4 months ago
A comparative analysis of the information content in long and short SAGE libraries
Background: Serial Analysis of Gene Expression (SAGE) is a powerful tool to determine gene expression profiles. Two types of SAGE libraries, ShortSAGE and LongSAGE, are classified...
Yi-Ju Li, Puting Xu, Xuejun Qin, Donald E. Schmech...
BMCBI
2007
106views more  BMCBI 2007»
13 years 4 months ago
Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework
Background: Serial Analysis of Gene Expression (SAGE) is a high-throughput method for inferring mRNA expression levels from the experimentally generated sequence based tags. Stand...
Michael A. Gilchrist, Hong Qin, Russell L. Zaretzk...
BMCBI
2006
216views more  BMCBI 2006»
13 years 4 months ago
Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data
Background: Retinal photoreceptors are highly specialised cells, which detect light and are central to mammalian vision. Many retinal diseases occur as a result of inherited dysfu...
Haiying Wang, Huiru Zheng, David Simpson, Francisc...
KDD
2001
ACM
169views Data Mining» more  KDD 2001»
14 years 5 months ago
Hierarchical cluster analysis of SAGE data for cancer profiling
In this paper we present a method for clustering SAGE (Serial Analysis of Gene Expression) data to detect similarities and dissimilarities between different types of cancer on the...
Jörg Sander, Monica C. Sleumer, Raymond T. Ng