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EUROGP
2004
Springer
145views Optimization» more  EUROGP 2004»
13 years 11 months ago
Toward an Alternative Comparison between Different Genetic Programming Systems
In this paper, we use multi-objective techniques to compare different genetic programming systems, permitting our comparison to concentrate on the effect of representation and sepa...
Nguyen Xuan Hoai, Robert I. McKay, Daryl Essam, Hu...
BMCBI
2004
95views more  BMCBI 2004»
13 years 6 months ago
PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of or
Background: The rapidly increasing number of completely sequenced genomes led to the establishment of the COG-database which, based on sequence homologies, assigns similar protein...
Florian Meereis, Michael Kaufmann
BMCBI
2008
110views more  BMCBI 2008»
13 years 6 months ago
Enhancing the prediction of protein pairings between interacting families using orthology information
Background: It has repeatedly been shown that interacting protein families tend to have similar phylogenetic trees. These similarities can be used to predicting the mapping betwee...
José M. G. Izarzugaza, David de Juan, Carle...
BMCBI
2008
130views more  BMCBI 2008»
13 years 6 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
ICPP
2009
IEEE
14 years 22 days ago
Fine-grain Parallelism Using Multi-core, Cell/BE, and GPU Systems: Accelerating the Phylogenetic Likelihood Function
We are currently faced with the situation where applications have increasing computational demands and there is a wide selection of parallel processor systems. In this paper we fo...
Frederico Pratas, Pedro Trancoso, Alexandros Stama...