Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
We present a novel matching and similarity evaluation method for planar geometric shapes represented by sets of polygonal curves. Given two shapes, the matching algorithm randomly...
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...