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DATESO
2007
157views Database» more  DATESO 2007»
9 years 11 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, ļ¬nding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
BMCBI
2006
129views more  BMCBI 2006»
9 years 9 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
NAR
2000
127views more  NAR 2000»
9 years 9 months ago
The EMBL Nucleotide Sequence Database
The European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database (http://www.ebi.ac. uk/embl/index.html ) is maintained at the European Bioinformatics Institute (EBI)...
Wendy Baker, Alexandra van den Broek, Evelyn Camon...
DEXAW
2006
IEEE
130views Database» more  DEXAW 2006»
10 years 3 months ago
Exploiting Geometrical Properties on Protein Similarity Search
This paper discusses about several combinations of protein similarity measurement-methods, with respect to normalization, spatial partitions, geometrical properties, and distance ...
Saiful Akbar, Josef Küng, Roland Wagner
BMCBI
2010
205views more  BMCBI 2010»
9 years 9 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
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