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» Inferring biological networks with output kernel trees
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BMCBI
2007
154views more  BMCBI 2007»
13 years 4 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
ICML
2006
IEEE
14 years 5 months ago
Kernelizing the output of tree-based methods
We extend tree-based methods to the prediction of structured outputs using a kernelization of the algorithm that allows one to grow trees as soon as a kernel can be defined on the...
Florence d'Alché-Buc, Louis Wehenkel, Pierr...
BMCBI
2007
153views more  BMCBI 2007»
13 years 4 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
BMCBI
2010
172views more  BMCBI 2010»
13 years 4 months ago
Inferring gene regression networks with model trees
Background: Novel strategies are required in order to handle the huge amount of data produced by microarray technologies. To infer gene regulatory networks, the first step is to f...
Isabel A. Nepomuceno-Chamorro, Jesús S. Agu...
JMLR
2010
129views more  JMLR 2010»
12 years 11 months ago
Efficient Multioutput Gaussian Processes through Variational Inducing Kernels
Interest in multioutput kernel methods is increasing, whether under the guise of multitask learning, multisensor networks or structured output data. From the Gaussian process pers...
Mauricio Alvarez, David Luengo, Michalis Titsias, ...