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» Inferring the Recent Duplication History of a Gene Cluster
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RECOMB
2009
Springer
13 years 11 months ago
Inferring the Recent Duplication History of a Gene Cluster
Abstract. Much important evolutionary activity occurs in gene clusters, where a copy of a gene may be free to evolve new functions. Computational methods to extract evolutionary in...
Giltae Song, Louxin Zhang, Tomás Vinar, Web...
RECOMB
2007
Springer
14 years 4 months ago
Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)
Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabro...
RECOMB
2009
Springer
13 years 11 months ago
Reconstructing Histories of Complex Gene Clusters on a Phylogeny
Abstract. Clusters of genes that have evolved by repeated segmental duplication present difficult challenges throughout genomic analysis, from sequence assembly to functional analy...
Tomás Vinar, Brona Brejová, Giltae S...
WABI
2004
Springer
116views Bioinformatics» more  WABI 2004»
13 years 9 months ago
Topological Rearrangements and Local Search Method for Tandem Duplication Trees
—The problem of reconstructing the duplication history of a set of tandemly repeated sequences was first introduced by Fitch [4]. Many recent studies deal with this problem, show...
Denis Bertrand, Olivier Gascuel
JCB
2007
99views more  JCB 2007»
13 years 4 months ago
Duplication and Inversion History of a Tandemly Repeated Genes Family
Given a phylogenetic tree for a family of tandemly repeated genes and their signed order on the chromosome, we aim to find the minimum number of inversions compatible with an evo...
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, ...