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» Information Retrieval Meets Gene Analysis
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BMCBI
2008
113views more  BMCBI 2008»
13 years 5 months ago
SynBlast: Assisting the analysis of conserved synteny information
Motivation: In the last years more than 20 vertebrate genomes have been sequenced, and the rate at which genomic DNA information becomes available is rapidly accelerating. Gene du...
Jörg Lehmann, Peter F. Stadler, Sonja J. Proh...
MIR
2005
ACM
143views Multimedia» more  MIR 2005»
13 years 10 months ago
Extracting information from multimedia meeting collections
Multimedia meeting collections, composed of unedited audio and video streams, handwritten notes, slides, and electronic documents that jointly constitute a raw record of complex h...
Daniel Gatica-Perez, Dong Zhang, Samy Bengio
BMCBI
2011
13 years 8 days ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
BMCBI
2010
126views more  BMCBI 2010»
13 years 5 months ago
GeneBrowser 2: an application to explore and identify common biological traits in a set of genes
Background: The development of high-throughput laboratory techniques created a demand for computer-assisted result analysis tools. Many of these techniques return lists of genes w...
Joel Arrais, João Fernandes, João Pe...
BMCBI
2010
110views more  BMCBI 2010»
13 years 5 months ago
Concept-based query expansion for retrieving gene related publications from MEDLINE
Background: Advances in biotechnology and in high-throughput methods for gene analysis have contributed to an exponential increase in the number of scientific publications in thes...
Sérgio Matos, Joel Arrais, João Maia...