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CDC
2008
IEEE
100views Control Systems» more  CDC 2008»
13 years 6 months ago
Input-output instability patterns of Chemical Reaction Networks
This paper describes a criterion for qualitative analysis of open Chemical Reaction Networks endowed with mass-action kinetics. The method can be applied to an extremely broad clas...
David Angeli
BMEI
2009
IEEE
13 years 5 months ago
Analysis of the Bipartite Networks of Domain Compositions and Metabolic Reactions
It is widely accepted that complexity of biological systems arises from combinations of common subunits. In this work we investigate the combinatorial patterns of protein domains ...
Chen-Hsiang Yeang
NAR
2006
87views more  NAR 2006»
13 years 4 months ago
From genomics to chemical genomics: new developments in KEGG
The increasing amount of genomic and molecular information is the basis for understanding higherorder biological systems, such as the cell and the 15 organism, and their interacti...
Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Ki...
BMCBI
2010
259views more  BMCBI 2010»
12 years 11 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
ANTSW
2010
Springer
13 years 2 months ago
Evaluating the Robustness of Activator-Inhibitor Models for Cluster Head Computation
Activator-inhibitor models have been widely used to explain several morphogenetic processes. They have also been used to engineer algorithms for computer graphics, distributed syst...
Lidia Yamamoto, Daniele Miorandi