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» Integrating Graph Rewriting and Standard Software Tools
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IUI
2005
ACM
13 years 11 months ago
Intelligent data entry assistant for XML using ensemble learning
XML has emerged as the primary standard of data representation and data exchange [13]. Although many software tools exist to assist the XML implementation process, data must be ma...
Danico Lee, Costas Tsatsoulis
BMCBI
2010
143views more  BMCBI 2010»
13 years 5 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
CODES
2007
IEEE
14 years 2 days ago
A code-generator generator for multi-output instructions
We address the problem of instruction selection for Multi-Output Instructions (MOIs), producing more than one result. Such inherently parallel hardware instructions are very commo...
Hanno Scharwächter, Jonghee M. Youn, Rainer L...
BMCBI
2010
153views more  BMCBI 2010»
13 years 5 months ago
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
BMCBI
2010
191views more  BMCBI 2010»
13 years 5 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...