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» Interaction Models for Biochemical Reactions
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JIB
2007
136views more  JIB 2007»
13 years 5 months ago
SABIO-RK: A data warehouse for biochemical reactions and their kinetics
Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions...
Olga Krebs, Martin Golebiewski, Renate Kania, Saqi...
BMCBI
2011
13 years 14 days ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
ARTMED
2006
108views more  ARTMED 2006»
13 years 5 months ago
Constructing explanatory process models from biological data and knowledge
We address the task of inducing explanatory models from observations and knowledge about candidate biological processes, using the illustrative problem of modeling photosynthesis ...
Pat Langley, Oren Shiran, Jeff Shrager, Ljupco Tod...
OWLED
2008
13 years 6 months ago
Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions
Central to a coherent understanding of cellular biology is a faithful representation of biochemical processes as it pertains to its molecular participants. Current representations ...
Michel Dumontier
ECAI
2004
Springer
13 years 10 months ago
Towards a Logical Analysis of Biochemical Reactions
We provide a logical model of biochemical reactions and show how hypothesis generation using weakest sufficient and strongest necessary conditions may be used to provide addition...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...