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BIOINFORMATICS
2006
124views more  BIOINFORMATICS 2006»
13 years 5 months ago
Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins
Motivation: In many proteins, helix-helix interactions can be critical to establishing protein conformation (folding) and dynamics, as well as determining associations between pro...
Anne E. Counterman Burba, Ursula Lehnert, Eric Z. ...
IV
1999
IEEE
134views Visualization» more  IV 1999»
13 years 10 months ago
Molecular Dynamics Simulation and Visualization
We have developed atomic-scale material models capable of melting, crystallization and amorphization. These models feature molecular dynamics governed by Langevin equations of mot...
Roman Durikovic, Teruaki Motooka
CPHYSICS
2007
113views more  CPHYSICS 2007»
13 years 5 months ago
Atomic-level simulation of non-equilibrium surface chemical reactions under plasma-wall interaction
Molecular dynamics (MD) simulations are used for the study of non-thermal-equilibrium reactions that take place on the substrate surface during plasma etching processes. In MD sim...
Satoshi Hamaguchi, Masashi Yamashiro, Hideaki Yama...
CGF
2010
143views more  CGF 2010»
13 years 5 months ago
Coherent Culling and Shading for Large Molecular Dynamics Visualization
Molecular dynamics simulations are a principal tool for studying molecular systems. Such simulations are used to investigate molecular structure, dynamics, and thermodynamical pro...
Sebastian Grottel, Guido Reina, Carsten Dachsbache...
ISVC
2009
Springer
13 years 10 months ago
Visualization of the Molecular Dynamics of Polymers and Carbon Nanotubes
Abstract. Research domains that deal with complex molecular systems often employ computer-based thermodynamics simulations to study molecular interactions and investigate phenomena...
Sidharth Thakur, Syamal Tallury, Melissa A. Pasqui...