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» Interface surfaces for protein-protein complexes
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BIBM
2007
IEEE
130views Bioinformatics» more  BIBM 2007»
13 years 11 months ago
Analysis of Protein Protein Dimeric Interfaces
We analyzed the structural properties and the local surface environment of surface amino acid residues of proteins using a large, non-redundant dataset of 2383 protein chains in d...
Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honav...
BIBM
2008
IEEE
145views Bioinformatics» more  BIBM 2008»
13 years 11 months ago
Identifying Interface Elements Implied in Protein-Protein Interactions Using Statistical Tests and Frequent Item Sets
Understanding what are the characteristics of proteinprotein interfaces is at the core of numerous applications. This paper introduces a method in which the proteins are described...
Christine Martin, Antoine Cornuéjols
BMCBI
2011
12 years 8 months ago
HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods
Background: Although homology-based methods are among the most widely used methods for predicting the structure and function of proteins, the question as to whether interface sequ...
Li C. Xue, Drena Dobbs, Vasant Honavar
COMPLIFE
2005
Springer
13 years 10 months ago
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces
A protein-protein interface (PPI) is defined by a pair of regions of two interacting protein molecules that are linked by non-covalent bonds. Recognition of conserved 3D patterns ...
Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussi...
NIPS
2004
13 years 6 months ago
Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale
Protein interactions typically arise from a physical interaction of one or more small sites on the surface of the two proteins. Identifying these sites is very important for drug ...
Haidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koll...