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    BMCBI
    2007
    97views more  BMCBI 2007»
    A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, hu
    13 years 5 months ago
    A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, hu
    Download  gbb.eldoc.ub.rug.nl
    Background: The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interp...
    Rudi Alberts, Peter Terpstra, Menno Hardonk, Leoni...
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    BMCBI
    2008
    181views more  BMCBI 2008»
    Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270
    13 years 3 months ago
    Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270
    Download  www.biomedcentral.com
    Background: Genome-wide association studies (GWAS) aim to identify genetic variants (usually single nucleotide polymorphisms [SNPs]) across the entire human genome that are associ...
    Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. ...
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    BMCBI
    2006
    155views more  BMCBI 2006»
    AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
    13 years 5 months ago
    AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
    Download  www.biomedcentral.com
    Background: DNA microarrays are a powerful tool for monitoring the expression of tens of thousands of genes simultaneously. With the advance of microarray technology, the challeng...
    Guoqing Lu, The V. Nguyen, Yuannan Xia, Michael Fr...
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    BMCBI
    2007
    120views more  BMCBI 2007»
    Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays
    13 years 5 months ago
    Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays
    Download  www.biomedcentral.com
    Background: Extracting biological information from high-density Affymetrix arrays is a multi-step process that begins with the accurate annotation of microarray probes. Shortfalls...
    Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. ...
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    BMCBI
    2007
    179views more  BMCBI 2007»
    Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data
    13 years 5 months ago
    Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data
    Download  www.biomedcentral.com
    Background: The wide use of Affymetrix microarray in broadened fields of biological research has made the probeset annotation an important issue. Standard Affymetrix probeset anno...
    Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, ...
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