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BMCBI
2006
101views more  BMCBI 2006»
13 years 5 months ago
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
Background: The development of algorithms to infer the structure of gene regulatory networks based on expression data is an important subject in bioinformatics research. Validatio...
Tim Van den Bulcke, Koen Van Leemput, Bart Naudts,...
BMCBI
2007
202views more  BMCBI 2007»
13 years 5 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
CORR
2004
Springer
133views Education» more  CORR 2004»
13 years 5 months ago
Information theory, multivariate dependence, and genetic network inference
We define the concept of dependence among multiple variables using maximum entropy techniques and introduce a graphical notation to denote the dependencies. Direct inference of in...
Ilya Nemenman
STOC
2006
ACM
108views Algorithms» more  STOC 2006»
14 years 5 months ago
Gowers uniformity, influence of variables, and PCPs
Gowers [Gow98, Gow01] introduced, for d 1, the notion of dimension-d uniformity Ud (f) of a function f : G C, where G is a finite abelian group. Roughly speaking, if a function ...
Alex Samorodnitsky, Luca Trevisan