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IJDMB
2008
128views more  IJDMB 2008»
13 years 5 months ago
Protein homology detection with biologically inspired features and interpretable statistical models
: Computational classification of proteins using methods such as string kernels and Fisher-SVM has demonstrated great success. However, the resulting models do not offer an immedia...
Pai-Hsi Huang, Vladimir Pavlovic
JMLR
2006
156views more  JMLR 2006»
13 years 5 months ago
Large Scale Multiple Kernel Learning
While classical kernel-based learning algorithms are based on a single kernel, in practice it is often desirable to use multiple kernels. Lanckriet et al. (2004) considered conic ...
Sören Sonnenburg, Gunnar Rätsch, Christi...
BMCBI
2010
111views more  BMCBI 2010»
13 years 5 months ago
Protein sequences classification by means of feature extraction with substitution matrices
Background: This paper deals with the preprocessing of protein sequences for supervised classification. Motif extraction is one way to address that task. It has been largely used ...
Rabie Saidi, Mondher Maddouri, Engelbert Mephu Ngu...
SDM
2011
SIAM
232views Data Mining» more  SDM 2011»
12 years 8 months ago
A Sequential Dual Method for Structural SVMs
In many real world prediction problems the output is a structured object like a sequence or a tree or a graph. Such problems range from natural language processing to computationa...
Shirish Krishnaj Shevade, Balamurugan P., S. Sunda...
JCB
2002
74views more  JCB 2002»
13 years 5 months ago
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences
Accurately estimating probabilities from observations is important for probabilistic-based approaches to problems in computational biology. In this paper we present a biologically...
Eleazar Eskin, William Stafford Noble, Yoram Singe...