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LREC
2008
103views Education» more  LREC 2008»
13 years 6 months ago
Learning the Species of Biomedical Named Entities from Annotated Corpora
In biomedical articles, terms with the same surface forms are often used to refer to different entities across a number of model organisms, in which case determining the species b...
Xinglong Wang, Claire Grover
LREC
2008
102views Education» more  LREC 2008»
13 years 6 months ago
Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition
We report on the construction of a gold-standard dataset consisting of annotated clinical notes suitable for evaluating our biomedical named entity recognition system. The dataset...
Philip V. Ogren, Guergana K. Savova, Christopher G...
BMCBI
2010
154views more  BMCBI 2010»
13 years 5 months ago
LINNAEUS: A species name identification system for biomedical literature
Background: The task of recognizing and identifying species names in biomedical literature has recently been regarded as critical for a number of applications in text and data min...
Martin Gerner, Goran Nenadic, Casey M. Bergman
BMCBI
2008
149views more  BMCBI 2008»
13 years 5 months ago
Accelerating the annotation of sparse named entities by dynamic sentence selection
This paper presents an active learning-like framework for reducing the human effort for making named entity annotations in a corpus. In this framework, the annotation work is perf...
Yoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Anania...
BMCBI
2007
124views more  BMCBI 2007»
13 years 5 months ago
BioInfer: a corpus for information extraction in the biomedical domain
Background: Lately, there has been a great interest in the application of information extraction methods to the biomedical domain, in particular, to the extraction of relationship...
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari B...