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BMCBI
2005
201views more  BMCBI 2005»
13 years 4 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
BMCBI
2006
100views more  BMCBI 2006»
13 years 4 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
JMLR
2010
179views more  JMLR 2010»
12 years 11 months ago
PAC-Bayesian Analysis of Co-clustering and Beyond
We derive PAC-Bayesian generalization bounds for supervised and unsupervised learning models based on clustering, such as co-clustering, matrix tri-factorization, graphical models...
Yevgeny Seldin, Naftali Tishby
ICUMT
2009
13 years 2 months ago
Two-layer network coordinate system for Internet distance prediction
Network coordinate (NC) system is an efficient and scalable system for Internet distance prediction. In this paper, we propose 3 two-layer NC systems HNPS, HBBS and HIDES derived f...
Chengbo Dong, Guodong Wang, Xuan Zhang, Beixing De...
WWW
2009
ACM
14 years 5 months ago
Extracting community structure through relational hypergraphs
Social media websites promote diverse user interaction on media objects as well as user actions with respect to other users. The goal of this work is to discover community structu...
Yu-Ru Lin, Jimeng Sun, Paul Castro, Ravi B. Konuru...