27 search results - page 2 / 6 » Locality and Gaps in RNA Comparison |
GCB
2005
Springer
13 years 11 months ago
2005
Springer
We present an extension of the standard partition function approach to RNA secondary structures that computes the probabilities Pu[i, j] that a sequence interval [i, j] is unpaired...
CPM
2006
Springer
13 years 9 months ago
2006
Springer
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
SRDS
2006
IEEE
13 years 11 months ago
2006
IEEE
The paper presents a comparative performance study of the two main classes of randomized binary consensus protocols: a local coin protocol, with an expected high communication com...
BMCBI
2007
13 years 5 months ago
2007
Background: Accurate identification of novel, functional noncoding (nc) RNA features in genome sequence has proven more difficult than for exons. Current algorithms identify and s...
BMCBI
2008
13 years 5 months ago
2008
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...