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CPM
2004
Springer
108views Combinatorics» more  CPM 2004»
13 years 10 months ago
Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences
A popular approach in comparative genomics is to locate groups or clusters of orthologous genes in multiple genomes and to postulate functional association between the genes contai...
Thomas Schmidt, Jens Stoye
DAM
2006
120views more  DAM 2006»
13 years 5 months ago
A bijection between permutations and floorplans, and its applications
A floorplan represents the relative relations between modules on an integrated circuit. Floorplans are commonly classified as slicing, mosaic, or general. Separable and Baxter per...
Eyal Ackerman, Gill Barequet, Ron Y. Pinter
DM
2008
97views more  DM 2008»
13 years 5 months ago
On uniquely k-determined permutations
Motivated by a new point of view to study occurrences of consecutive patterns in permutations, we introduce the notion of uniquely k-determined permutations. We give two criteria f...
Sergey V. Avgustinovich, Sergey Kitaev
EJC
2008
13 years 5 months ago
Pattern classes of permutations via bijections between linearly ordered sets
Abstract. A pattern class is a set of permutations closed under pattern involvement or, equivalently, defined by certain subsequence avoidance conditions. Any pattern class X which...
Sophie Huczynska, Nikola Ruskuc
APPROX
2004
Springer
117views Algorithms» more  APPROX 2004»
13 years 10 months ago
The Greedy Algorithm for the Minimum Common String Partition Problem
In the Minimum Common String Partition problem (MCSP) we are given two strings on input, and we wish to partition them into the same collection of substrings, minimizing the numbe...
Marek Chrobak, Petr Kolman, Jiri Sgall