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» Massively Parallel Solutions for Molecular Sequence Analysis
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ICCS
2009
Springer
14 years 6 hour ago
A Massively Parallel Architecture for Bioinformatics
Abstract. Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, err...
Gerd Pfeiffer, Stefan Baumgart, Jan Schröder,...
PC
2010
100views Management» more  PC 2010»
13 years 6 days ago
Analysis of the solution phase of a parallel multifrontal approach
We study the forward and backward substitution phases of a sparse multifrontal factorization. These phases are often neglected in papers on sparse direct factorization but, in man...
Patrick Amestoy, Iain S. Duff, Abdou Guermouche, T...
TPDS
1998
112views more  TPDS 1998»
13 years 5 months ago
Parallel Computation in Biological Sequence Analysis
—A massive volume of biological sequence data is available in over 36 different databases worldwide, including the sequence data generated by the Human Genome project. These data...
Tieng K. Yap, Ophir Frieder, Robert L. Martino
VISUALIZATION
1995
IEEE
13 years 9 months ago
Visualization of Biological Sequence Similarity Search Results
Biological sequence similarity analysis presents visualization challenges, primarily because of the massive amounts of discrete, multi-dimensional data. Genomic data generated by ...
Ed Huai-hsin Chi, Phillip Barry, Elizabeth Shoop, ...
BMCBI
2010
175views more  BMCBI 2010»
13 years 5 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...