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IJCBDD
2008
113views more  IJCBDD 2008»
13 years 5 months ago
Parsimony accelerated Maximum Likelihood searches
: Phylogenetic search is a key tool used in a variety of biological research endeavors. However, this search problem is known to be computationally difficult, due to the astronomic...
Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll,...
TCBB
2008
107views more  TCBB 2008»
13 years 5 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
ICIP
2010
IEEE
13 years 2 months ago
Morphological wavelet transform with adaptive dyadic structures
We propose a two component method for denoising multidimensional signals, e.g. images. The first component uses a dynamic programing algorithm of complexity O(N log N) to find an ...
Zhen James Xiang, Peter J. Ramadge
GECCO
2005
Springer
150views Optimization» more  GECCO 2005»
13 years 11 months ago
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
Evolutionary relationships among species can be represented by a phylogenetic tree and inferred by optimising some measure of fitness, such as the statistical likelihood of the t...
Leon Poladian
COCOON
1997
Springer
13 years 9 months ago
Edge and Node Searching Problems on Trees
In this paper, we consider the edge searching and node searching problems on trees. Given a tree, we show a transformation from an optimal node-search strategy to an optimal edge-...
Sheng-Lung Peng, Chin-Wen Ho, Tsan-sheng Hsu, Ming...