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» MindReader: Querying Databases Through Multiple Examples
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BMCBI
2006
114views more  BMCBI 2006»
13 years 5 months ago
Taxonomic colouring of phylogenetic trees of protein sequences
Background: Phylogenetic analyses of protein families are used to define the evolutionary relationships between homologous proteins. The interpretation of protein-sequence phyloge...
Gareth Palidwor, Emmanuel G. Reynaud, Miguel A. An...
DLOG
2003
13 years 7 months ago
Conceptual Modeling with Description Logics
The purpose of the chapter is to help someone familiar with DLs to understand the issues involved in developing an ontology for some universe of discourse, which is to become a co...
Alexander Borgida, Ronald J. Brachman
BMCBI
2011
13 years 24 days ago
LabKey Server: An open source platform for scientific data integration, analysis and collaboration
Background: Broad-based collaborations are becoming increasingly common among disease researchers. For example, the Global HIV Enterprise has united cross-disciplinary consortia t...
Elizabeth K. Nelson, Britt Piehler, Josh Eckels, A...
BMCBI
2010
163views more  BMCBI 2010»
13 years 5 months ago
DraGnET: Software for storing, managing and analyzing annotated draft genome sequence data
Background: New "next generation" DNA sequencing technologies offer individual researchers the ability to rapidly generate large amounts of genome sequence data at drama...
Stacy Duncan, Ruchita Sirkanungo, Leslie Miller, G...
BMCBI
2010
175views more  BMCBI 2010»
13 years 5 months ago
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
Background: Many complementary solutions are available for the identifier mapping problem. This creates an opportunity for bioinformatics tool developers. Tools can be made to fle...
Martijn P. van Iersel, Alexander R. Pico, Thomas K...