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IJKDB
2010
141views more  IJKDB 2010»
13 years 2 months ago
Mining Frequent Boolean Expressions: Application to Gene Expression and Regulatory Modeling
Regulatory network analysis and other bioinformatics tasks require the ability to induce and represent arbitrary boolean expressions from data sources. We introduce a novel framew...
Mohammed Javeed Zaki, Naren Ramakrishnan, Lizhuang...
BIODATAMINING
2008
130views more  BIODATAMINING 2008»
13 years 5 months ago
Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profil
Background: Contrary to the traditional biology approach, where the expression patterns of a handful of genes are studied at a time, microarray experiments enable biologists to st...
Qicheng Ma, Gung-Wei Chirn, Joseph D. Szustakowski...
CEC
2003
IEEE
13 years 9 months ago
Dynamics of gene expression in an artificial genome
Abstract- Complex systems techniques provide a powerful tool to study the emergent properties of networks of interacting genes. In this study we extract models of genetic regulator...
Kai Willadsen, Janet Wiles
IDEAL
2004
Springer
13 years 11 months ago
Building Genetic Networks for Gene Expression Patterns
Building genetic regulatory networks from time series data of gene expression patterns is an important topic in bioinformatics. Probabilistic Boolean networks (PBNs) have been deve...
Wai-Ki Ching, Eric S. Fung, Michael K. Ng
KDD
2006
ACM
173views Data Mining» more  KDD 2006»
14 years 6 months ago
BLOSOM: a framework for mining arbitrary boolean expressions
We introduce a novel framework (BLOSOM) for mining (frequent) boolean expressions over binary-valued datasets. We organize the space of boolean expressions into four categories: p...
Lizhuang Zhao, Mohammed J. Zaki, Naren Ramakrishna...