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BMCBI
2006
127views more  BMCBI 2006»
13 years 5 months ago
Automatic discovery of cross-family sequence features associated with protein function
Background: Methods for predicting protein function directly from amino acid sequences are useful tools in the study of uncharacterised protein families and in comparative genomic...
Markus Brameier, Josien Haan, Andrea Krings, Rober...
ICALP
2001
Springer
13 years 9 months ago
Permutation Editing and Matching via Embeddings
Abstract. If the genetic maps of two species are modelled as permutations of (homologous) genes, the number of chromosomal rearrangements in the form of deletions, block moves, inv...
Graham Cormode, S. Muthukrishnan, Süleyman Ce...
BMCBI
2010
144views more  BMCBI 2010»
13 years 5 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...
GECCO
2006
Springer
162views Optimization» more  GECCO 2006»
13 years 8 months ago
Evolutionary learning with kernels: a generic solution for large margin problems
In this paper we embed evolutionary computation into statistical learning theory. First, we outline the connection between large margin optimization and statistical learning and s...
Ingo Mierswa
ASIAN
2004
Springer
150views Algorithms» more  ASIAN 2004»
13 years 10 months ago
Concurrent Constraint-Based Memory Machines: A Framework for Java Memory Models
A central problem in extending the von Neumann architecture to petaflop computers with millions of hardware threads and with a shared memory is defining the memory model [Lam79,...
Vijay A. Saraswat