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» Mining RNA Tertiary Motifs with Structure Graphs
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SSDBM
2007
IEEE
131views Database» more  SSDBM 2007»
13 years 10 months ago
Mining RNA Tertiary Motifs with Structure Graphs
We present a novel application of graph database mining to identify tertiary motifs in RNA structures. In od, we abstract an RNA molecule as a labeled graph and use a frequent sub...
Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang 0010
BMCBI
2004
190views more  BMCBI 2004»
13 years 4 months ago
RAG: RNA-As-Graphs web resource
Background: The proliferation of structural and functional studies of RNA has revealed an increasing range of RNA's structural repertoire. Toward the objective of systematic ...
Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie...
NAR
2002
84views more  NAR 2002»
13 years 4 months ago
SCOR: a Structural Classification of RNA database
The Structural Classification of RNA (SCOR) database provides a survey of the three-dimensional motifs contained in 259 NMR and X-ray RNA structures. In one classification, the st...
Peter S. Klosterman, Makio Tamura, Stephen R. Holb...
BMCBI
2006
95views more  BMCBI 2006»
13 years 4 months ago
A quantitative analysis of secondary RNA structure using domination based parameters on trees
Background: It has become increasingly apparent that a comprehensive database of RNA motifs is essential in order to achieve new goals in genomic and proteomic research. Secondary...
Teresa W. Haynes, Debra J. Knisley, Edith Seier, Y...
IV
2006
IEEE
108views Visualization» more  IV 2006»
13 years 10 months ago
From Visualization to Manipulation of RNA Secondary and Tertiary Structures
Ribonucleic Acid (RNA) is an important molecule which performs a wide range of functions in biological systems. We present a method for visualizing, exploring and editing RNA mole...
Gilles Bailly, David Auber, Laurence Nigay