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» Mining protein networks for synthetic genetic interactions
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BMCBI
2008
95views more  BMCBI 2008»
13 years 4 months ago
Mining protein networks for synthetic genetic interactions
Background: The local connectivity and global position of a protein in a protein interaction network are known to correlate with some of its functional properties, including its e...
Sri R. Paladugu, Shan Zhao, Animesh Ray, Alpan Rav...
BMCBI
2010
179views more  BMCBI 2010»
13 years 4 months ago
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties
Background: Genetic interaction profiles are highly informative and helpful for understanding the functional linkages between genes, and therefore have been extensively exploited ...
Zhuhong You, Zheng Yin, Kyungsook Han, De-Shuang H...
BMCBI
2005
95views more  BMCBI 2005»
13 years 4 months ago
Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast
Background: In a genetic interaction, the phenotype of a double mutant differs from the combined phenotypes of the underlying single mutants. When the single mutants have no growt...
Ping Ye, Brian D. Peyser, Forrest A. Spencer, Joel...
BMCBI
2005
169views more  BMCBI 2005»
13 years 4 months ago
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
Background: Synthetic lethality experiments identify pairs of genes with complementary function. More direct functional associations (for example greater probability of membership...
Yan Qi 0003, Ping Ye, Joel S. Bader
KDD
2004
ACM
125views Data Mining» more  KDD 2004»
14 years 5 months ago
Differential Association Rule Mining for the Study of Protein-Protein Interaction Networks
Protein-protein interactions are of great interest to biologists. A variety of high-throughput techniques have been devised, each of which leads to a separate definition of an int...
Christopher Besemann, Anne Denton, Ajay Yekkirala,...