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» Mixin Modules and Computational Effects
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ICSM
2007
IEEE
13 years 11 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
ECOOP
2010
Springer
13 years 10 months ago
Modules as Objects in Newspeak
Abstract. We describe support for modularity in Newspeak, a programming language descended from Smalltalk [33] and Self [69]. Like Self, all computation — even an object’s own ...
Gilad Bracha, Peter von der Ahé, Vassili By...
GECCO
2007
Springer
153views Optimization» more  GECCO 2007»
13 years 11 months ago
Analyzing the effects of module encapsulation on search space bias
Modularity is thought to improve the evolvability of biological systems [18, 22]. Recent studies in the field of evolutionary computation show that the use of modularity improves...
Ozlem O. Garibay, Annie S. Wu
BMCBI
2010
118views more  BMCBI 2010»
13 years 5 months ago
svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identifica
Background: Comparative analysis of gene expression profiling of multiple biological categories, such as different species of organisms or different kinds of tissue, promises to e...
Wensheng Zhang, Andrea Edwards, Wei Fan, Dongxiao ...
GECCO
2009
Springer
13 years 12 months ago
On the performance effects of unbiased module encapsulation
A recent theoretical investigation of modular representations shows that certain modularizations can introduce a distance bias into a landscape. This was a static analysis, and em...
R. Paul Wiegand, Gautham Anil, Ivan I. Garibay, Oz...