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CIKM
2008
Springer
13 years 8 months ago
Pairwise statistical significance of local sequence alignment using multiple parameter sets
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
Ankit Agrawal, Xiaoqiu Huang
BMCBI
2010
117views more  BMCBI 2010»
13 years 6 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
BMCBI
2007
173views more  BMCBI 2007»
13 years 6 months ago
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is a high-throughput assay for DNA-protein-binding or post-translational chromatin/histone modi...
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny ...
CODES
2005
IEEE
13 years 11 months ago
SOMA: a tool for synthesizing and optimizing memory accesses in ASICs
Arbitrary memory dependencies and variable latency memory systems are major obstacles to the synthesis of large-scale ASIC systems in high-level synthesis. This paper presents SOM...
Girish Venkataramani, Tiberiu Chelcea, Seth Copen ...
ICCS
2009
Springer
14 years 17 days ago
A Scalable and Adaptable Solution Framework within Components of the Community Climate System Model
Abstract. A framework for a fully implicit solution method is implemented into (1) the High Order Methods Modeling Environment (HOMME), which is a spectral element dynamical core o...
Katherine J. Evans, Damian W. I. Rouson, Andrew G....