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CCGRID
2004
IEEE
13 years 8 months ago
Molecular structure determination on a computational and data Grid
The focus of this paper is on the design and implementation of a critical program in structural biology onto two computational and data grids. The first is the Buffalo-based ACDC ...
Mark L. Green, Russ Miller
CCGRID
2004
IEEE
13 years 8 months ago
Evolutionary molecular structure determination using Grid-enabled data mining
A new computational framework is developed for the evolutionary determination of molecular crystal structures using the Shake-and-Bake methodology. Genetic algorithms are performe...
Mark L. Green, Russ Miller
IPPS
2009
IEEE
13 years 11 months ago
High-throughput protein structure determination using grid computing
Determining the X-ray crystallographic structures of proteins using the technique of molecular replacement (MR) can be a time and labor-intensive trial-and-error process, involvin...
Jason W. Schmidberger, Blair Bethwaite, Colin Enti...
BMCBI
2010
175views more  BMCBI 2010»
13 years 4 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
SMA
2009
ACM
185views Solid Modeling» more  SMA 2009»
13 years 11 months ago
A dynamic data structure for flexible molecular maintenance and informatics
We present the “Dynamic Packing Grid” (DPG) data structure along with details of our implementation and performance results, for maintaining and manipulating flexible molecul...
Chandrajit L. Bajaj, Rezaul Alam Chowdhury, Muhibu...