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    BMCBI
    2006
    144views more  BMCBI 2006»
    More robust detection of motifs in coexpressed genes by using phylogenetic information
    13 years 4 months ago
    More robust detection of motifs in coexpressed genes by using phylogenetic information
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    Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
    Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...
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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 4 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
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    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    BMCBI
    2011
    218views Artificial Intelligence» more  BMCBI 2011»
    A mutation degree model for the identification of transcriptional regulatory elements
    12 years 7 months ago
    A mutation degree model for the identification of transcriptional regulatory elements
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    Background: Current approaches for identifying transcriptional regulatory elements are mainly via the combination of two properties, the evolutionary conservation and the overrepr...
    Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, H...
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    BMCBI
    2006
    202views more  BMCBI 2006»
    Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
    13 years 4 months ago
    Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
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    Background: The learning of global genetic regulatory networks from expression data is a severely under-constrained problem that is aided by reducing the dimensionality of the sea...
    David J. Reiss, Nitin S. Baliga, Richard Bonneau
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    BMCBI
    2007
    97views more  BMCBI 2007»
    In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
    13 years 4 months ago
    In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
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    Background: Microarray co-expression signatures are an important tool for studying gene function and relations between genes. In addition to genuine biological co-expression, corr...
    Tineke Casneuf, Yves Van de Peer, Wolfgang Huber
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