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» Motif Discovery in Heterogeneous Sequence Data
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BMCBI
2010
219views more  BMCBI 2010»
13 years 23 days ago
BiologicalNetworks 2.0 - an integrative view of genome biology data
Background: A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the differe...
Sergey Kozhenkov, Yulia Dubinina, Mayya Sedova, Am...
BMCBI
2010
96views more  BMCBI 2010»
13 years 5 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
BMCBI
2008
179views more  BMCBI 2008»
13 years 5 months ago
Bayesian modeling of recombination events in bacterial populations
Background: We consider the discovery of recombinant segments jointly with their origins within multilocus DNA sequences from bacteria representing heterogeneous populations of fa...
Pekka Marttinen, Adam Baldwin, William P. Hanage, ...
CCGRID
2006
IEEE
13 years 11 months ago
Using Multiple Grid Resources for Bioinformatics Applications in GADU
During the past decade, the scientific community has witnessed the rapid accumulation of gene sequence data and data related to physiology and biochemistry of organisms. Bioinform...
Dinanath Sulakhe, Alex Rodriguez, Michael Wilde, I...
BMCBI
2006
110views more  BMCBI 2006»
13 years 5 months ago
Design of a combinatorial DNA microarray for protein-DNA interaction studies
Background: Discovery of precise specificity of transcription factors is an important step on the way to understanding the complex mechanisms of gene regulation in eukaryotes. Rec...
Julian Mintseris, Michael B. Eisen