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BMCBI
2010
135views more  BMCBI 2010»
13 years 4 months ago
MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees
Background: MapReduce is a parallel framework that has been used effectively to design largescale parallel applications for large computing clusters. In this paper, we evaluate th...
Suzanne Matthews, Tiffani L. Williams
BMCBI
2010
135views more  BMCBI 2010»
13 years 4 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
ICDE
2010
IEEE
290views Database» more  ICDE 2010»
13 years 8 months ago
The Model-Summary Problem and a Solution for Trees
Modern science is collecting massive amounts of data from sensors, instruments, and through computer simulation. It is widely believed that analysis of this data will hold the key ...
Biswanath Panda, Mirek Riedewald, Daniel Fink
RECOMB
2006
Springer
14 years 4 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...