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» Multiclass discovery in array data
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JMLR
2010
117views more  JMLR 2010»
12 years 11 months ago
Exploiting the High Predictive Power of Multi-class Subgroups
Subgroup discovery aims at finding subsets of a population whose class distribution is significantly different from the overall distribution. A number of multi-class subgroup disc...
Tarek Abudawood, Peter A. Flach
BMCBI
2005
94views more  BMCBI 2005»
13 years 4 months ago
Visualization-based discovery and analysis of genomic aberrations in microarray data
Background: Chromosomal copy number changes (aneuploidies) play a key role in cancer progression and molecular evolution. These copy number changes can be studied using microarray...
Chad L. Myers, Xing Chen, Olga G. Troyanskaya
BMCBI
2005
86views more  BMCBI 2005»
13 years 4 months ago
WebArray: an online platform for microarray data analysis
Background: Many cutting-edge microarray analysis tools and algorithms, including commonly used limma and affy packages in Bioconductor, need sophisticated knowledge of mathematic...
Xiaoqin Xia, Michael McClelland, Yipeng Wang
BMCBI
2006
146views more  BMCBI 2006»
13 years 4 months ago
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE
Background: In class prediction problems using microarray data, gene selection is essential to improve the prediction accuracy and to identify potential marker genes for a disease...
Satoshi Niijima, Satoru Kuhara
BMCBI
2005
121views more  BMCBI 2005»
13 years 4 months ago
Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data
Background: A critical step in processing oligonucleotide microarray data is combining the information in multiple probes to produce a single number that best captures the express...
Kerby Shedden, Wei Chen, Rork Kuick, Debashis Ghos...