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ICASSP
2010
IEEE
13 years 3 months ago
Multiple sequence alignment based bootstrapping for improved incremental word learning
We investigate incremental word learning with few training examples in a Hidden Markov Model (HMM) framework suitable for an interactive learning scenario with little prior knowle...
Irene Ayllól Clemente, Martin Heckmann, Ger...
ACL
2010
13 years 2 months ago
Active Learning-Based Elicitation for Semi-Supervised Word Alignment
Semi-supervised word alignment aims to improve the accuracy of automatic word alignment by incorporating full or partial manual alignments. Motivated by standard active learning q...
Vamshi Ambati, Stephan Vogel, Jaime G. Carbonell
EVOW
2010
Springer
13 years 8 months ago
Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments
A challenging problem in bioinformatics is the detection of residues that account for protein function specificity, not only in order to gain deeper insight in the nature of functi...
Elena Marchiori
ALMOB
2008
85views more  ALMOB 2008»
13 years 4 months ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
TCBB
2008
120views more  TCBB 2008»
13 years 4 months ago
Learning Scoring Schemes for Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
Eagu Kim, John D. Kececioglu