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BMCBI
2011
12 years 8 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
ICS
2009
Tsinghua U.
13 years 12 months ago
Less reused filter: improving l2 cache performance via filtering less reused lines
The L2 cache is commonly managed using LRU policy. For workloads that have a working set larger than L2 cache, LRU behaves poorly, resulting in a great number of less reused lines...
Lingxiang Xiang, Tianzhou Chen, Qingsong Shi, Wei ...
BMCBI
2010
160views more  BMCBI 2010»
13 years 5 months ago
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Background: Use of alternative gene promoters that drive widespread cell-type, tissue-type or developmental gene regulation in mammalian genomes is a common phenomenon. Chromatin ...
Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhat...