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» Negative Information for Motif Discovery
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BMCBI
2007
190views more  BMCBI 2007»
13 years 5 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
PSB
2004
13 years 6 months ago
Negative Information for Motif Discovery
Ken T. Takusagawa, David K. Gifford
BMCBI
2007
145views more  BMCBI 2007»
13 years 5 months ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...
KES
2005
Springer
13 years 10 months ago
Generalized Composite Motif Discovery
This paper discusses a general algorithm for the discovery of motif combinations. From a large number of input motifs, discovered by any single motif discovery tool, our algorithm ...
Geir Kjetil Sandve, Finn Drabløs
BMCBI
2010
124views more  BMCBI 2010»
13 years 5 months ago
The value of position-specific priors in motif discovery using MEME
Background: Position-specific priors have been shown to be a flexible and elegant way to extend the power of Gibbs sampler-based motif discovery algorithms. Information of many ty...
Timothy L. Bailey, Mikael Bodén, Tom Whitin...