429 search results - page 1 / 86 » New Algorithms for SIMD Alignment |
CC
2007
Springer
13 years 11 months ago
2007
Springer
Optimizing programs for modern multiprocessor or vector platforms is a major important challenge for compilers today. In this work, we focus on one challenging aspect: the SIMD ALI...
IEEEPACT
2007
IEEE
13 years 11 months ago
2007
IEEE
Many sorting algorithms have been studied in the past, but there are only a few algorithms that can effectively exploit both SIMD instructions and threadlevel parallelism. In this...
PLDI
2004
ACM
13 years 10 months ago
2004
ACM
When vectorizing for SIMD architectures that are commonly employed by today’s multimedia extensions, one of the new challenges that arise is the handling of memory alignment. Pr...
BMCBI
2011
12 years 8 months ago
2011
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
PPAM
2007
Springer
13 years 11 months ago
2007
Springer
Abstract. Whole genome comparison compares (aligns) two genome sequences assuming that analogous characteristics may be found. In this paper, we present an SIMD version of the Smit...